C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dicer 1, ribonuclease type III
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041987 Dicer1-201 ENSMUSG00000041415 10090 - 12:104687742-104751952 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041987
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041987 5.349±2.26 4.090±1.01 3.955±0.98 8.073±1.50 3.920±1.38 2.368±1.49 1.855±1.04 2.686±1.43 2.575±0.76 4.186±2.04 1.759±0.81 6.180±2.09 5.868±3.35 1.484±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085I CIL_00085I_0002 VISTA 12:104600832-105202741
CIL_00099M CIL_00099M_0002 VISTA 12:104639330-105240069
CIL_0008Z4 CIL_0008Z4_0002 VISTA 12:104639392-105239908
CIL_0003QP CIL_0003QP_0002 CGP 12:104687742-104865076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IMP angiogenesis
GO:0001942 IMP hair follicle development
GO:0003725 IEA double-stranded RNA binding
GO:0004386 IEA helicase activity
GO:0004525 ISA ribonuclease III activity
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005793 IEA endoplasmic reticulum-Golgi intermediate compartment
GO:0006396 IDA RNA processing
GO:0008283 IMP cell proliferation
GO:0009791 IMP post-embryonic development
GO:0010070 IMP zygote asymmetric cell division
GO:0010468 IMP regulation of gene expression
GO:0010628 IMP positive regulation of gene expression
GO:0010660 IMP regulation of muscle cell apoptotic process
GO:0014835 IMP myoblast differentiation involved in skeletal muscle regeneration
GO:0016075 IEA rRNA catabolic process
GO:0016442 IEA RISC complex
GO:0019827 IMP stem cell maintenance
GO:0021522 IMP spinal cord motor neuron differentiation
GO:0021889 IMP olfactory bulb interneuron differentiation
GO:0021987 IMP cerebral cortex development
GO:0030324 IMP lung development
GO:0030326 IMP embryonic limb morphogenesis
GO:0030422 IDA production of siRNA involved in RNA interference
GO:0030423 IEA targeting of mRNA for destruction involved in RNA interference
GO:0030424 IEA axon
GO:0030425 IEA dendrite
GO:0030426 IEA growth cone
GO:0031054 IDA pre-miRNA processing
GO:0031069 IMP hair follicle morphogenesis
GO:0031641 IMP regulation of myelination
GO:0031643 IMP positive regulation of myelination
GO:0035068 IDA micro-ribonucleoprotein complex
GO:0035116 IMP embryonic hindlimb morphogenesis
GO:0035196 IMP production of miRNAs involved in gene silencing by miRNA
GO:0035198 IDA miRNA binding
GO:0035264 IMP multicellular organism growth
GO:0042487 IMP regulation of odontogenesis of dentin-containing tooth
GO:0045069 IMP regulation of viral genome replication
GO:0045595 IMP regulation of cell differentiation
GO:0045664 IMP regulation of neuron differentiation
GO:0048255 IMP mRNA stabilization
GO:0048536 IMP spleen development
GO:0048565 IMP digestive tract development
GO:0048608 IMP reproductive structure development
GO:0048713 IMP regulation of oligodendrocyte differentiation
GO:0048730 IMP epidermis morphogenesis
GO:0048754 IMP branching morphogenesis of an epithelial tube
GO:0048856 IMP anatomical structure development
GO:0050767 IMP regulation of neurogenesis
GO:0051216 IMP cartilage development
GO:0051225 IMP spindle assembly
GO:0051252 IMP regulation of RNA metabolic process
GO:0051607 IMP defense response to virus
GO:0051726 IMP regulation of cell cycle
GO:0055013 IMP cardiac muscle cell development
GO:0060119 IMP inner ear receptor cell development
GO:0060576 IGI intestinal epithelial cell development
GO:0061309 IMP cardiac neural crest cell development involved in outflow tract morphogenesis
GO:0061548 IMP ganglion development
GO:0070173 IMP regulation of enamel mineralization
GO:0071335 IMP hair follicle cell proliferation
GO:0090501 IEA RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic
GO:2000628 IMP regulation of miRNA metabolic process
GO:2000630 IMP positive regulation of miRNA metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109826 dicer1-201 protein_coding Danio_rerio 0 636
ENSDART00000045881 dicer1-001 protein_coding Danio_rerio 0 636
ENST00000343455 DICER1-001 protein_coding Homo_sapiens 0 7507
ENST00000393063 DICER1-201 protein_coding Homo_sapiens 0 7232
ENST00000526495 DICER1-004 protein_coding Homo_sapiens 0 7232
ENST00000527414 DICER1-006 protein_coding Homo_sapiens 0 7232
ENST00000529206 DICER1-005 retained_intron Homo_sapiens 0 1103
ENST00000529720 DICER1-003 protein_coding Homo_sapiens 0 401
ENST00000531162 DICER1-002 protein_coding Homo_sapiens 0 401
ENST00000532458 DICER1-009 processed_transcript Homo_sapiens 0 409
ENST00000532939 DICER1-008 protein_coding Homo_sapiens 0 1162
ENST00000541352 DICER1-016 protein_coding Homo_sapiens 0 6671
ENST00000554367 DICER1-015 retained_intron Homo_sapiens 0 1225
ENST00000556045 DICER1-014 protein_coding Homo_sapiens 0 2767
ENST00000556681 DICER1-013 retained_intron Homo_sapiens 0 431

Loading