C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor 3b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000053775 arf3b-001 ENSDARG00000036998 7955 + 6:7361714-7369374 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverMuscleENSDART00000053775
Transcript ID Heart Kidney Liver Muscle
ENSDART00000053775 0.247±0.00 0.886±0.00 0.128±0.00 1.935±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002BO CIL_0002BO_0001 CGP 6:7345428-7369374

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003924 IEA GTPase activity
GO:0004871 IEA signal transducer activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006886 IEA intracellular protein transport
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0019001 IEA guanyl nucleotide binding
GO:0031683 IEA G-protein beta/gamma-subunit complex binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022429 Arf4-001 protein_coding Mus_musculus 0 209
ENSMUST00000112318 Arf4-002 protein_coding Mus_musculus 2e-30 137
ENSMUST00000166075 Arf4-003 nonsense_mediated_decay Mus_musculus 3e-30 137
ENSMUST00000167376 Arf4-005 nonsense_mediated_decay Mus_musculus 0.000003 57
ENSMUST00000171282 Arf4-004 processed_transcript Mus_musculus 0.0000005 60
ENST00000272102 ARF1-001 protein_coding Homo_sapiens 0 429
ENST00000469235 ARF1-010 processed_transcript Homo_sapiens 0 372
ENST00000470558 ARF1-006 processed_transcript Homo_sapiens 0 429
ENST00000470670 ARF1-003 processed_transcript Homo_sapiens 0 355
ENST00000473949 ARF1-005 processed_transcript Homo_sapiens 0 333
ENST00000477451 ARF1-008 processed_transcript Homo_sapiens 0 257
ENST00000478336 ARF1-007 processed_transcript Homo_sapiens 0 429
ENST00000478424 ARF1-004 processed_transcript Homo_sapiens 0 429
ENST00000482962 ARF1-009 processed_transcript Homo_sapiens 0 335
ENST00000490705 ARF1-012 processed_transcript Homo_sapiens 0 189
ENST00000497165 ARF1-011 processed_transcript Homo_sapiens 0 366
ENST00000540651 ARF1-201 protein_coding Homo_sapiens 0 429
ENST00000541182 ARF1-202 protein_coding Homo_sapiens 0 429

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