C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000272102 ARF1-001 ENSG00000143761 9606 + 1:228082660-228099212 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272102
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272102 117.072±0.00 125.625±0.00 17.708±0.00 68.545±25.01 60.427±22.63 73.895±30.64 58.137±44.31 81.004±48.97 73.078±45.01 130.434±107.49 96.695±74.60 152.381±76.85 378.750±32.36 215.960±78.73

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002090 ISS regulation of receptor internalization
GO:0003924 TAS:IEA GTPase activity
GO:0004871 IEA signal transducer activity
GO:0005057 TAS receptor signaling protein activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0006184 TAS GTP catabolic process
GO:0006644 TAS phospholipid metabolic process
GO:0006661 TAS phosphatidylinositol biosynthetic process
GO:0006878 IMP cellular copper ion homeostasis
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016032 TAS viral process
GO:0019001 IEA guanyl nucleotide binding
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0031683 IEA G-protein beta/gamma-subunit complex binding
GO:0034315 ISS regulation of Arp2/3 complex-mediated actin nucleation
GO:0043005 IEA neuron projection
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045211 IEA postsynaptic membrane
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0050690 TAS regulation of defense response to virus by virus
GO:0060292 ISS long term synaptic depression
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome
GO:0097061 ISS dendritic spine organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061242 Arf1-001 protein_coding Mus_musculus 0 1400
ENSMUST00000163300 Arf1-201 protein_coding Mus_musculus 0 1288
ENSMUST00000191395 RP24-316C22.1-001 processed_pseudogene Mus_musculus 0 636
ENSMUST00000053183 Arf3-001 protein_coding Mus_musculus 0 534
ENSDART00000053775 arf3b-001 protein_coding Danio_rerio 0 429

Loading