C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022429 Arf4-001 ENSMUSG00000021877 10090 + 14:26638074-26657258 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022429
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022429 80.069±48.30 301.199±81.80 66.214±10.63 54.803±44.99 134.091±123.28 273.498±42.42 25.944±9.42 55.280±35.17 49.538±31.21 70.439±31.86 2.665±0.55 107.890±102.19 51.802±41.37 49.838±31.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00074S CIL_00074S_0002 CGP 14:26638074-26669883

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005154 IEA epidermal growth factor receptor binding
GO:0005515 IPI protein binding
GO:0005525 TAS GTP binding
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005829 IEA cytosol
GO:0005886 IDA plasma membrane
GO:0006471 IEA protein ADP-ribosylation
GO:0007173 IEA epidermal growth factor receptor signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007420 IEA brain development
GO:0015031 TAS protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016477 IEA cell migration
GO:0031584 IEA activation of phospholipase D activity
GO:0032587 IEA ruffle membrane
GO:0043066 IEA negative regulation of apoptotic process
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048678 IEA response to axon injury
GO:0070062 IEA extracellular vesicular exosome
GO:2000377 IEA regulation of reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000053775 arf3b-001 protein_coding Danio_rerio 0 209
ENST00000303436 ARF4-001 protein_coding Homo_sapiens 0 1585
ENST00000439608 ARF4P4-001 processed_pseudogene Homo_sapiens 0 433
ENST00000463880 ARF4-006 protein_coding Homo_sapiens 0 592
ENST00000483848 ARF4-005 processed_transcript Homo_sapiens 0 241
ENST00000486310 ARF4-002 nonsense_mediated_decay Homo_sapiens 0 1395
ENST00000488156 ARF4-009 protein_coding Homo_sapiens 8e-23 111
ENST00000489843 ARF4-003 protein_coding Homo_sapiens 0 1112
ENST00000493378 ARF4-008 processed_transcript Homo_sapiens 0 250
ENST00000495354 ARF4-007 processed_transcript Homo_sapiens 4e-24 115
ENST00000496292 ARF4-004 protein_coding Homo_sapiens 0 1315
ENST00000605447 RP11-349K21.1-001 processed_pseudogene Homo_sapiens 0 701

Loading