C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, ATPase, 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000593455 PSMC4-003 ENSG00000013275 9606 + 19:39971170-39981408 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverLungOvaryENST00000593455
Transcript ID Adrenal Brain Breast Colon Liver Lung Ovary
ENST00000593455 15.579±0.00 13.720±0.00 7.711±0.00 3.012±0.00 6.970±0.00 12.551±0.00 6.487±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032824 Psmc4-001 protein_coding Mus_musculus 0 1291
ENSMUST00000135482 Psmc4-002 retained_intron Mus_musculus 0 1218
ENSMUST00000138512 Psmc4-003 retained_intron Mus_musculus 0 869
ENSMUST00000140053 Psmc4-005 processed_transcript Mus_musculus 0 830
ENSDART00000034078 psmc4-001 protein_coding Danio_rerio 0 815
ENSMUST00000126528 Psmc4-004 retained_intron Mus_musculus 0 675
ENSMUST00000134486 Psmc4-006 retained_intron Mus_musculus 0 643
ENSDART00000152444 psmc6-002 nonsense_mediated_decay Danio_rerio 0.0000006 60
ENSDART00000053834 psmc6-001 protein_coding Danio_rerio 0.0000006 60

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