C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif, single stranded interacting protein 2b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000060059 rbms2b-001 ENSDARG00000056150 7955 + 23:25996126-26056104 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000060059
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000060059 6.999±1.68 19.371±4.42 1.262±0.60 0.188±0.00 2.002±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028347 Rbms1-001 protein_coding Mus_musculus 0 366
ENSMUST00000112509 Rbms1-002 protein_coding Mus_musculus 0 315
ENSMUST00000164147 Rbms1-201 protein_coding Mus_musculus 0 315
ENST00000262031 RBMS2-001 protein_coding Homo_sapiens 0 405
ENST00000549945 RBMS2-007 processed_transcript Homo_sapiens 0 263
ENST00000550726 RBMS2-004 protein_coding Homo_sapiens 0 327
ENST00000551369 RBMS2-008 nonsense_mediated_decay Homo_sapiens 0 283
ENST00000552247 RBMS2-006 protein_coding Homo_sapiens 0 405
ENST00000552916 RBMS2-002 nonsense_mediated_decay Homo_sapiens 2.8026e-45 187

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