C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif, single stranded interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028347 Rbms1-001 ENSMUSG00000026970 10090 - 2:60750193-60963192 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028347
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028347 12.009±2.89 6.783±0.90 12.030±0.37 5.945±3.90 9.187±0.83 4.743±0.66 7.700±1.09 7.639±1.68 4.536±0.67 20.475±1.76 1.785±0.62 8.560±3.75 18.294±1.96 8.118±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TW CIL_0005TW_0002 CGP 2:60598292-60963192
CIL_0005KZ CIL_0005KZ_0002 CGP 2:60750193-61654171

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006260 IEA DNA replication

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000060059 rbms2b-001 protein_coding Danio_rerio 0 366
ENST00000348849 RBMS1-001 protein_coding Homo_sapiens 0 3624
ENST00000392753 RBMS1-201 protein_coding Homo_sapiens 0 3014
ENST00000409075 RBMS1-006 protein_coding Homo_sapiens 0 1940
ENST00000409289 RBMS1-009 protein_coding Homo_sapiens 0 1945
ENST00000409972 RBMS1-007 protein_coding Homo_sapiens 0 1938
ENST00000417216 RBMS1P1-001 processed_pseudogene Homo_sapiens 0 1397
ENST00000428519 RBMS1-015 protein_coding Homo_sapiens 0 527
ENST00000464200 RBMS1-011 retained_intron Homo_sapiens 0 204
ENST00000474147 RBMS1-003 retained_intron Homo_sapiens 0 641
ENST00000474820 RBMS1-002 processed_transcript Homo_sapiens 0 1965
ENST00000475103 RBMS1-010 processed_transcript Homo_sapiens 0 536
ENST00000477486 RBMS1-014 retained_intron Homo_sapiens 0 248
ENST00000477965 RBMS1-004 retained_intron Homo_sapiens 0 815
ENST00000490637 RBMS1-008 retained_intron Homo_sapiens 0 835
ENST00000491781 RBMS1-005 retained_intron Homo_sapiens 0 1328
ENST00000492283 RBMS1-012 processed_transcript Homo_sapiens 0 355

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