C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif, single stranded interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112509 Rbms1-002 ENSMUSG00000026970 10090 - 2:60752722-60881470 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000112509
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000112509 17.714±2.76 12.799±0.00 5.354±0.00 14.205±4.97 9.846±3.83 6.399±1.36 5.164±1.47 3.571±0.51 30.313±11.20 2.425±0.00 20.232±11.15 10.945±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TW CIL_0005TW_0002 CGP 2:60598292-60963192
CIL_0005KZ CIL_0005KZ_0002 CGP 2:60750193-61654171

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006260 IEA DNA replication

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000060059 rbms2b-001 protein_coding Danio_rerio 0 315
ENST00000348849 RBMS1-001 protein_coding Homo_sapiens 0 1072
ENST00000392753 RBMS1-201 protein_coding Homo_sapiens 0 1066
ENST00000409075 RBMS1-006 protein_coding Homo_sapiens 0 1112
ENST00000409289 RBMS1-009 protein_coding Homo_sapiens 0 1112
ENST00000409972 RBMS1-007 protein_coding Homo_sapiens 0 1170
ENST00000417216 RBMS1P1-001 processed_pseudogene Homo_sapiens 0 1040
ENST00000428519 RBMS1-015 protein_coding Homo_sapiens 0 527
ENST00000464200 RBMS1-011 retained_intron Homo_sapiens 0 204
ENST00000474147 RBMS1-003 retained_intron Homo_sapiens 0 636
ENST00000474820 RBMS1-002 processed_transcript Homo_sapiens 0 1975
ENST00000475103 RBMS1-010 processed_transcript Homo_sapiens 0 536
ENST00000477486 RBMS1-014 retained_intron Homo_sapiens 0 248
ENST00000477965 RBMS1-004 retained_intron Homo_sapiens 0 815
ENST00000490637 RBMS1-008 retained_intron Homo_sapiens 0 835
ENST00000491781 RBMS1-005 retained_intron Homo_sapiens 0 1064
ENST00000492283 RBMS1-012 processed_transcript Homo_sapiens 0 355

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