C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 constitutive photomorphogenic homolog subunit 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000080332 cops5-001 ENSDARG00000057624 7955 + 24:24324866-24333319 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000080332
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000080332 15.629±5.86 7.346±6.15 5.357±4.92 1.294±0.00 7.795±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006508 IEA proteolysis
GO:0008180 IEA COP9 signalosome
GO:0008233 IEA peptidase activity
GO:0008237 IEA metallopeptidase activity
GO:0016787 IEA hydrolase activity
GO:0046872 IEA metal ion binding
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027050 Cops5-001 protein_coding Mus_musculus 0 771
ENSMUST00000139578 Cops5-003 retained_intron Mus_musculus 0 531
ENSMUST00000186528 Cops5-006 nonsense_mediated_decay Mus_musculus 0 625
ENSMUST00000191296 Cops5-004 retained_intron Mus_musculus 7e-28 128

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