C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000186528 Cops5-006 ENSMUSG00000025917 10090 - 1:10027198-10037941 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000186528
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000186528 28.098±1.38 17.732±3.47 22.755±2.17 47.743±3.67 16.893±6.99 16.850±3.24 17.761±1.71 16.280±2.06 20.907±4.88 13.087±1.34 18.668±6.64 22.734±0.00 58.617±3.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BC CIL_0003BC_0002 CGP 1:9968624-10038168
CIL_0003BF CIL_0003BF_0002 CGP 1:10024601-10136768

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000080332 cops5-001 protein_coding Danio_rerio 0 625
ENST00000357849 COPS5-001 protein_coding Homo_sapiens 0 1192
ENST00000415778 COPS5P1-001 processed_pseudogene Homo_sapiens 0 647
ENST00000517736 COPS5-010 protein_coding Homo_sapiens 0 891
ENST00000517834 PPP1R42-013 processed_transcript Homo_sapiens 0 309
ENST00000518374 COPS5-004 nonsense_mediated_decay Homo_sapiens 0 961
ENST00000518747 COPS5-006 protein_coding Homo_sapiens 0 704
ENST00000521386 COPS5-003 retained_intron Homo_sapiens 0 959
ENST00000521509 COPS5-002 retained_intron Homo_sapiens 0 959
ENST00000523086 COPS5-009 processed_transcript Homo_sapiens 0 230
ENST00000523890 COPS5-012 nonsense_mediated_decay Homo_sapiens 0 957

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