C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027050 Cops5-001 ENSMUSG00000025917 10090 - 1:10024601-10038127 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027050
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027050 12.060±1.97 27.250±4.07 28.298±10.92 5.124±2.10 3.529±0.00 7.483±2.36 8.535±1.60 17.762±13.31 5.801±1.48 57.072±1.89 14.125±12.69 30.977±9.61 32.931±2.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BC CIL_0003BC_0002 CGP 1:9968624-10038168
CIL_0003BF CIL_0003BF_0002 CGP 1:10024601-10136768

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000338 IEA protein deneddylation
GO:0003713 TAS transcription coactivator activity
GO:0004843 IEA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 TAS transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006508 IEA proteolysis
GO:0008021 IEA synaptic vesicle
GO:0008180 IDA COP9 signalosome
GO:0008237 IEA metallopeptidase activity
GO:0010388 IEA cullin deneddylation
GO:0016579 IEA protein deubiquitination
GO:0030054 IEA cell junction
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046328 IEA regulation of JNK cascade
GO:0046872 IEA metal ion binding
GO:0051726 IMP regulation of cell cycle
GO:1990182 IEA exosomal secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000080332 cops5-001 protein_coding Danio_rerio 0 771
ENST00000357849 COPS5-001 protein_coding Homo_sapiens 0 1513
ENST00000415778 COPS5P1-001 processed_pseudogene Homo_sapiens 0 651
ENST00000517736 COPS5-010 protein_coding Homo_sapiens 0 885
ENST00000517834 PPP1R42-013 processed_transcript Homo_sapiens 0 309
ENST00000518374 COPS5-004 nonsense_mediated_decay Homo_sapiens 0 1206
ENST00000518747 COPS5-006 protein_coding Homo_sapiens 0 704
ENST00000521386 COPS5-003 retained_intron Homo_sapiens 0 1075
ENST00000521509 COPS5-002 retained_intron Homo_sapiens 0 1206
ENST00000523086 COPS5-009 processed_transcript Homo_sapiens 0 324
ENST00000523890 COPS5-012 nonsense_mediated_decay Homo_sapiens 0 1075

Loading