C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139578 Cops5-003 ENSMUSG00000025917 10090 - 1:10030920-10037938 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungOvaryENSMUST00000139578
Transcript ID Adrenal Breast Colon Lung Ovary
ENSMUST00000139578 2.704±0.53 2.708±0.90 2.583±0.00 3.375±0.57 3.511±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BC CIL_0003BC_0002 CGP 1:9968624-10038168
CIL_0003BF CIL_0003BF_0002 CGP 1:10024601-10136768

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000080332 cops5-001 protein_coding Danio_rerio 0 531
ENST00000357849 COPS5-001 protein_coding Homo_sapiens 0 989
ENST00000415778 COPS5P1-001 processed_pseudogene Homo_sapiens 0 564
ENST00000517736 COPS5-010 protein_coding Homo_sapiens 0 721
ENST00000517834 PPP1R42-013 processed_transcript Homo_sapiens 2e-32 143
ENST00000518374 COPS5-004 nonsense_mediated_decay Homo_sapiens 0 721
ENST00000518747 COPS5-006 protein_coding Homo_sapiens 0 704
ENST00000521386 COPS5-003 retained_intron Homo_sapiens 0 721
ENST00000521509 COPS5-002 retained_intron Homo_sapiens 0 721
ENST00000523890 COPS5-012 nonsense_mediated_decay Homo_sapiens 0 721

Loading