C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box J1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000082866 foxj1a-201 ENSDARG00000059545 7955 - 3:61262545-61278874 protein_coding

Danio rerio EnsemblZv9

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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000082866
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000082866 1.993±0.44 0.016±0.00 2.571±0.84 0.013±0.00 0.706±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IBA negative regulation of transcription from RNA polymerase II promoter
GO:0001947 IMP heart looping
GO:0002635 IBA negative regulation of germinal center formation
GO:0002897 IBA positive regulation of central B cell tolerance induction
GO:0002924 IBA negative regulation of humoral immune response mediated by circulating immunoglobulin
GO:0003146 IMP heart jogging
GO:0003351 IMP epithelial cilium movement
GO:0003677 IEA DNA binding
GO:0003690 IBA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003705 IBA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 IBA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0007368 IMP determination of left/right symmetry
GO:0008134 IBA transcription factor binding
GO:0008301 IBA DNA binding, bending
GO:0009611 IMP response to wounding
GO:0030036 IBA actin cytoskeleton organization
GO:0030324 IBA lung development
GO:0030855 IBA epithelial cell differentiation
GO:0032088 IBA negative regulation of NF-kappaB transcription factor activity
GO:0032862 IBA activation of Rho GTPase activity
GO:0033085 IBA negative regulation of T cell differentiation in thymus
GO:0035089 IBA establishment of apical/basal cell polarity
GO:0042130 IBA negative regulation of T cell proliferation
GO:0042384 IMP cilium assembly
GO:0043565 IEA sequence-specific DNA binding
GO:0045409 IBA negative regulation of interleukin-6 biosynthetic process
GO:0050869 IBA negative regulation of B cell activation
GO:0050900 IBA leukocyte migration
GO:0060271 IDA cilium morphogenesis
GO:0060296 IMP regulation of cilium beat frequency involved in ciliary motility
GO:0060972 IBA left/right pattern formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036215 Foxj1-001 protein_coding Mus_musculus 0 265
ENST00000313071 FOXG1-001 protein_coding Homo_sapiens 0.00000000001 77
ENST00000322957 FOXJ1-001 protein_coding Homo_sapiens 0 268

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