C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box J1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000322957 FOXJ1-001 ENSG00000129654 9606 - 17:76136333-76141299 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLungOvaryTestisENST00000322957
Transcript ID Kidney Lung Ovary Testis
ENST00000322957 2.690±0.00 21.577±19.98 21.652±11.18 22.569±2.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0001 VISTA 17:75822026-76422503
CIL_0001IN CIL_0001IN_0001 CGP 17:76081017-76141299
CIL_0007CH CIL_0007CH_0001 CGP 17:76136333-76240373

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000976 IDA transcription regulatory region sequence-specific DNA binding
GO:0002508 ISS central tolerance induction
GO:0002635 ISS negative regulation of germinal center formation
GO:0002897 ISS positive regulation of central B cell tolerance induction
GO:0002924 ISS negative regulation of humoral immune response mediated by circulating immunoglobulin
GO:0003677 NAS DNA binding
GO:0003700 NAS:IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006959 ISS humoral immune response
GO:0007283 NAS spermatogenesis
GO:0007389 ISS pattern specification process
GO:0007420 ISS brain development
GO:0030036 ISS actin cytoskeleton organization
GO:0030856 IEA regulation of epithelial cell differentiation
GO:0032088 ISS negative regulation of NF-kappaB transcription factor activity
GO:0032862 ISS activation of Rho GTPase activity
GO:0033085 ISS negative regulation of T cell differentiation in thymus
GO:0035089 ISS establishment of apical/basal cell polarity
GO:0035502 IEP metanephric part of ureteric bud development
GO:0042130 IEA negative regulation of T cell proliferation
GO:0042384 ISS cilium assembly
GO:0043565 IEA sequence-specific DNA binding
GO:0045409 ISS negative regulation of interleukin-6 biosynthetic process
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0050869 ISS negative regulation of B cell activation
GO:0050900 ISS leukocyte migration
GO:0060271 ISS cilium morphogenesis
GO:0060428 NAS lung epithelium development
GO:0060429 ISS epithelium development
GO:0060972 IEA left/right pattern formation
GO:0072016 IEP glomerular parietal epithelial cell development
GO:1901248 IDA positive regulation of lung ciliated cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036215 Foxj1-001 protein_coding Mus_musculus 0 1940
ENSDART00000082866 foxj1a-201 protein_coding Danio_rerio 0 268

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