C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box G1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000313071 FOXG1-001 ENSG00000176165 9606 + 14:28766974-28770273 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLungOvaryPlacentaTestisENST00000313071
Transcript ID Adipose Adrenal Brain Breast Colon Lung Ovary Placenta Testis
ENST00000313071 0.026±0.00 0.125±0.00 6.404±3.41 0.004±0.00 0.048±0.00 0.064±0.00 0.068±0.02 0.030±0.00 5.329±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095I CIL_00095I_0001 VISTA 14:28456869-29058467
CIL_0008Y3 CIL_0008Y3_0001 VISTA 14:28595815-29196929
CIL_0007MH CIL_0007MH_0001 UCNEbase 14:28763941-29529087

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007420 TAS brain development
GO:0007568 IEA aging
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179669 Foxg1-201 protein_coding Mus_musculus 0 3838
ENSMUST00000156952 Foxg1-004 retained_intron Mus_musculus 0 3814
ENSMUST00000021333 Foxg1-001 protein_coding Mus_musculus 0 3783
ENSMUST00000110746 3110039M20Rik-001 protein_coding Mus_musculus 0 1092
ENSDART00000098868 foxg1c-201 protein_coding Danio_rerio 0 361
ENSDART00000139352 foxg1c-001 protein_coding Danio_rerio 0 361
ENSDART00000013642 foxg1b-201 protein_coding Danio_rerio 0 342
ENSDART00000102505 foxg1d-201 protein_coding Danio_rerio 0 289
ENSMUST00000054691 Foxc2-001 protein_coding Mus_musculus 0 202
ENSDART00000082866 foxj1a-201 protein_coding Danio_rerio 0.00000000001 77
ENSMUST00000135006 Foxg1-002 processed_transcript Mus_musculus 8e-22 108

Loading