C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box J1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036215 Foxj1-001 ENSMUSG00000034227 10090 - 11:116330704-116335399 protein_coding

Mus musculus EnsemblGRCm38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036215
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036215 0.376±0.36 0.073±0.01 0.048±0.02 6.888±4.41 1.050±0.53 0.373±0.09 0.816±0.84 0.339±0.05 0.302±0.31 26.538±9.90 0.039±0.03 25.741±13.29 1.115±1.07 29.133±13.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0002 VISTA 11:116019003-116619995
CIL_0001IN CIL_0001IN_0002 CGP 11:116288001-116335399
CIL_0007CH CIL_0007CH_0002 CGP 11:116330704-116413032

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000976 IEA transcription regulatory region sequence-specific DNA binding
GO:0002508 IMP central tolerance induction
GO:0002635 IMP negative regulation of germinal center formation
GO:0002897 IMP positive regulation of central B cell tolerance induction
GO:0002924 IMP negative regulation of humoral immune response mediated by circulating immunoglobulin
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006959 IMP humoral immune response
GO:0007420 IEP brain development
GO:0030036 IMP actin cytoskeleton organization
GO:0030856 IDA regulation of epithelial cell differentiation
GO:0032088 IMP negative regulation of NF-kappaB transcription factor activity
GO:0032862 IDA activation of Rho GTPase activity
GO:0033085 IMP negative regulation of T cell differentiation in thymus
GO:0035089 IMP establishment of apical/basal cell polarity
GO:0035502 IEA metanephric part of ureteric bud development
GO:0042130 IMP negative regulation of T cell proliferation
GO:0042384 IMP cilium assembly
GO:0045409 IMP negative regulation of interleukin-6 biosynthetic process
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0050869 IMP negative regulation of B cell activation
GO:0050900 IMP leukocyte migration
GO:0060271 IGI cilium morphogenesis
GO:0060429 IEP epithelium development
GO:0060972 IMP left/right pattern formation
GO:0072016 IEA glomerular parietal epithelial cell development
GO:1901248 IEA positive regulation of lung ciliated cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082866 foxj1a-201 protein_coding Danio_rerio 0 265
ENST00000322957 FOXJ1-001 protein_coding Homo_sapiens 0 1940

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