C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RanBP-type and C3HC4-type zinc finger containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000145889 Rbck1-006 ENSMUSG00000027466 10090 - 2:152318312-152323498 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaENSMUST00000145889
Transcript ID Brain Ovary Placenta
ENSMUST00000145889 20.887±0.00 31.156±0.00 10.523±1.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0002 VISTA 2:152099091-152699726

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000083719 shrprbck1r-201 protein_coding Danio_rerio 9e-28 128
ENST00000353660 RBCK1-009 protein_coding Homo_sapiens 0 909
ENST00000356286 RBCK1-010 protein_coding Homo_sapiens 0 909
ENST00000382181 RBCK1-006 protein_coding Homo_sapiens 0 675
ENST00000382214 RBCK1-005 nonsense_mediated_decay Homo_sapiens 0 747
ENST00000415942 RBCK1-011 nonsense_mediated_decay Homo_sapiens 0 675
ENST00000468272 RBCK1-008 retained_intron Homo_sapiens 0 429

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