C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RanBP-type and C3HC4-type zinc finger containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109847 Rbck1-001 ENSMUSG00000027466 10090 - 2:152316334-152332412 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109847
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109847 43.671±0.84 95.473±7.88 28.680±1.94 28.297±13.63 64.653±8.08 50.302±4.71 16.811±2.26 26.813±1.96 20.321±3.84 49.185±1.53 10.891±2.55 51.808±23.47 11.382±5.95 11.252±1.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0002 VISTA 2:152099091-152699726

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IEA protein polyubiquitination
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0032088 IEA negative regulation of NF-kappaB transcription factor activity
GO:0042346 IMP positive regulation of NF-kappaB import into nucleus
GO:0043065 IMP positive regulation of apoptotic process
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 ISS ubiquitin binding
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0050852 IEA T cell receptor signaling pathway
GO:0051092 IEA positive regulation of NF-kappaB transcription factor activity
GO:0060546 IGI negative regulation of necroptotic process
GO:0071797 ISS LUBAC complex
GO:0097039 ISS protein linear polyubiquitination
GO:2001238 IMP positive regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000083719 shrprbck1r-201 protein_coding Danio_rerio 5e-34 150
ENST00000353660 RBCK1-009 protein_coding Homo_sapiens 0 1602
ENST00000356286 RBCK1-010 protein_coding Homo_sapiens 0 1829
ENST00000382181 RBCK1-006 protein_coding Homo_sapiens 0 802
ENST00000382214 RBCK1-005 nonsense_mediated_decay Homo_sapiens 0 1666
ENST00000400245 RBCK1-003 processed_transcript Homo_sapiens 0.0000000000003 81
ENST00000411647 RBCK1-004 protein_coding Homo_sapiens 0 435
ENST00000415942 RBCK1-011 nonsense_mediated_decay Homo_sapiens 0 802
ENST00000468272 RBCK1-008 retained_intron Homo_sapiens 0 429
ENST00000475269 RBCK1-001 protein_coding Homo_sapiens 0 230

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