C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMG7 nonsense mediated mRNA decay factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000507469 SMG7-010 ENSG00000116698 9606 + 1:183472503-183554188 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000507469
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000507469 3.559±0.00 5.194±0.00 3.582±1.71 3.108±0.00 2.331±0.00 1.441±0.00 0.697±0.00 1.936±0.94 1.069±0.70 3.773±0.00 5.315±0.00 20.217±7.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BJ CIL_0001BJ_0002 CGP 1:183248237-183598246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006406 TAS mRNA export from nucleus
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0035303 TAS regulation of dephosphorylation
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051721 IDA protein phosphatase 2A binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111836 Smg7-001 protein_coding Mus_musculus 0 5057
ENSMUST00000043560 Smg7-003 protein_coding Mus_musculus 0 4859
ENSMUST00000073441 Smg7-002 protein_coding Mus_musculus 0 2584
ENSMUST00000186692 Smg7-004 processed_transcript Mus_musculus 0 741
ENSDART00000085976 smg7-201 protein_coding Danio_rerio 0 717
ENSMUST00000186900 Smg7-005 processed_transcript Mus_musculus 0 556
ENSMUST00000188937 Smg7-006 retained_intron Mus_musculus 0 411

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