C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: cadherin 12, type 2 (N-cadherin 2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000087446 CDH12 (2 of 2)-201 ENSDARG00000078226 7955 + 2:28727595-28831724 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyENSDART00000087446
Transcript ID Brain Kidney
ENSDART00000087446 0.140±0.00 0.162±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XA CIL_0003XA_0002 CGP 2:28710608-29067510

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007156 IEA homophilic cell adhesion
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264463 CDH10-001 protein_coding Homo_sapiens 2.99878e-43 182
ENST00000510477 CDH10-002 nonsense_mediated_decay Homo_sapiens 2.00386e-43 182

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