C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 10, type 2 (T2-cadherin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000510477 CDH10-002 ENSG00000040731 9606 - 5:24487348-24644780 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartOvaryPlacentaTestisENST00000510477
Transcript ID Adipose Brain Colon Heart Ovary Placenta Testis
ENST00000510477 0.005±0.00 1.537±0.44 0.071±0.00 0.028±0.00 0.013±0.00 0.048±0.03 0.161±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MJ CIL_0006MJ_0002 CGP 5:24487100-27121150

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176146 Cdh10-003 nonsense_mediated_decay Mus_musculus 0 2638
ENSMUST00000166873 Cdh10-001 protein_coding Mus_musculus 0 1674
ENSMUST00000040562 Cdh10-002 protein_coding Mus_musculus 0 1548
ENSMUST00000176409 Cdh10-006 retained_intron Mus_musculus 0 1267
ENSMUST00000176593 Cdh10-005 retained_intron Mus_musculus 0 1103
ENSMUST00000036439 Cdh6-201 protein_coding Mus_musculus 0 490
ENSDART00000087446 CDH12 (2 of 2)-201 protein_coding Danio_rerio 2.00386e-43 182
ENSDART00000138733 CDH12 (2 of 2)-001 protein_coding Danio_rerio 2.00386e-43 182
ENSDART00000078232 cdh10-001 protein_coding Danio_rerio 2e-29 135

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