C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 10, type 2 (T2-cadherin)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264463 CDH10-001 ENSG00000040731 9606 - 5:24487100-24644978 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverLungPlacentaTestisENST00000264463
Transcript ID Brain Colon Kidney Liver Lung Placenta Testis
ENST00000264463 2.993±1.01 0.012±0.00 0.020±0.00 0.048±0.00 0.036±0.00 0.054±0.00 0.248±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MJ CIL_0006MJ_0002 CGP 5:24487100-27121150

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016337 NAS single organismal cell-cell adhesion
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166873 Cdh10-001 protein_coding Mus_musculus 0 3570
ENSMUST00000040562 Cdh10-002 protein_coding Mus_musculus 0 3445
ENSMUST00000176409 Cdh10-006 retained_intron Mus_musculus 0 1570
ENSMUST00000176146 Cdh10-003 nonsense_mediated_decay Mus_musculus 0 1504
ENSMUST00000176593 Cdh10-005 retained_intron Mus_musculus 0 1103
ENSMUST00000036439 Cdh6-201 protein_coding Mus_musculus 0 490
ENSDART00000087446 CDH12 (2 of 2)-201 protein_coding Danio_rerio 2.99878e-43 182
ENSDART00000138733 CDH12 (2 of 2)-001 protein_coding Danio_rerio 2.99878e-43 182
ENSDART00000078232 cdh10-001 protein_coding Danio_rerio 2e-29 135

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