C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger E-box binding homeobox 2b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000090019 zeb2b-201 ENSDARG00000078416 7955 - 6:912352-956982 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverMuscleENSDART00000090019
Transcript ID Heart Liver Muscle
ENSDART00000090019 0.296±0.00 0.009±0.00 0.625±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L9 CIL_0007L9_0007 UCNEbase 6:481033-1513096

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001755 IMP neural crest cell migration
GO:0001756 IMP somitogenesis
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0009953 IGI dorsal/ventral pattern formation
GO:0014029 IMP neural crest formation
GO:0035622 IMP intrahepatic bile duct development
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding
GO:0060028 IMP convergent extension involved in axis elongation
GO:0060030 IGI dorsal convergence

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028229 Zeb2-002 protein_coding Mus_musculus 0 597
ENSMUST00000068415 Zeb2-201 protein_coding Mus_musculus 0 597
ENSMUST00000076836 Zeb2-011 protein_coding Mus_musculus 0 597
ENSMUST00000176438 Zeb2-001 protein_coding Mus_musculus 0 597
ENSMUST00000176732 Zeb2-013 protein_coding Mus_musculus 0 348
ENSMUST00000177302 Zeb2-007 protein_coding Mus_musculus 0 597
ENST00000303660 ZEB2-020 protein_coding Homo_sapiens 0 604
ENST00000392861 ZEB2-007 protein_coding Homo_sapiens 0 510
ENST00000409487 ZEB2-011 protein_coding Homo_sapiens 0 604
ENST00000419938 ZEB2-013 protein_coding Homo_sapiens 0 375
ENST00000427902 ZEB2-010 protein_coding Homo_sapiens 0 601
ENST00000440875 ZEB2-201 protein_coding Homo_sapiens 0 510
ENST00000497268 ZEB2-027 retained_intron Homo_sapiens 0 220
ENST00000539609 ZEB2-025 protein_coding Homo_sapiens 0 592
ENST00000558170 ZEB2-001 protein_coding Homo_sapiens 0 604

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