C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger E-box binding homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303660 ZEB2-020 ENSG00000169554 9606 - 2:144388013-144520002 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303660
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303660 15.861±0.00 12.738±0.00 8.422±0.00 13.469±5.52 11.072±3.96 6.260±1.95 6.654±1.17 4.169±0.55 12.031±10.23 12.880±0.93 1.495±0.17 9.504±4.18 4.890±0.74 6.634±5.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L9 CIL_0007L9_0003 UCNEbase 2:143915206-145198080
CIL_0006M9 CIL_0006M9_0001 CGP 2:143938068-144524580
CIL_0008S1 CIL_0008S1_0001 VISTA 2:144130532-144732245
CIL_0008RV CIL_0008RV_0001 VISTA 2:144143079-144743846
CIL_000944 CIL_000944_0001 VISTA 2:144209700-144811716
CIL_0008FM CIL_0008FM_0001 VISTA 2:144282035-144883963
CIL_0007GY CIL_0007GY_0001 CGP 2:144388001-147930826

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005634 IEA:IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007399 NAS nervous system development
GO:0019208 NAS phosphatase regulator activity
GO:0045636 ISS positive regulation of melanocyte differentiation
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0048023 IC positive regulation of melanin biosynthetic process
GO:0048066 ISS developmental pigmentation
GO:0097324 ISS melanocyte migration
GO:1903056 ISS regulation of melanosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068415 Zeb2-201 protein_coding Mus_musculus 0 7829
ENSMUST00000176438 Zeb2-001 protein_coding Mus_musculus 0 7829
ENSMUST00000028229 Zeb2-002 protein_coding Mus_musculus 0 7703
ENSMUST00000076836 Zeb2-011 protein_coding Mus_musculus 0 5786
ENSMUST00000177302 Zeb2-007 protein_coding Mus_musculus 0 5734
ENSMUST00000176732 Zeb2-013 protein_coding Mus_musculus 0 1467
ENSMUST00000131635 Zeb2-008 processed_transcript Mus_musculus 0 617
ENSDART00000090019 zeb2b-201 protein_coding Danio_rerio 0 604
ENSMUST00000127520 Zeb2-005 protein_coding Mus_musculus 0 547
ENSMUST00000145529 Zeb2-004 retained_intron Mus_musculus 0 510
ENSMUST00000123037 Zeb2-012 retained_intron Mus_musculus 0 375
ENSMUST00000124942 Zeb2-009 protein_coding Mus_musculus 0 375
ENSMUST00000153561 Zeb2-006 protein_coding Mus_musculus 0 267
ENSMUST00000152232 Zeb2-010 protein_coding Mus_musculus 0 263
ENSMUST00000126743 Zeb2-003 processed_transcript Mus_musculus 0 241

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