C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger E-box binding homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028229 Zeb2-002 ENSMUSG00000026872 10090 - 2:44987125-45110464 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028229
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028229 6.024±1.60 3.023±0.11 5.640±1.22 5.849±0.37 4.161±0.59 1.174±0.12 1.069±0.13 2.058±0.57 1.957±1.54 6.142±1.46 1.489±0.26 6.467±4.03 1.284±0.46 0.567±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L9 CIL_0007L9_0005 UCNEbase 2:43782078-47834434
CIL_0006M9 CIL_0006M9_0002 CGP 2:44564412-45117395
CIL_0008S1 CIL_0008S1_0002 VISTA 2:44723631-45325444
CIL_0008RV CIL_0008RV_0002 VISTA 2:44736258-45337036
CIL_000944 CIL_000944_0002 VISTA 2:44802219-45404360
CIL_0008FM CIL_0008FM_0002 VISTA 2:44871143-45472955
CIL_0007GY CIL_0007GY_0002 CGP 2:44983634-48903269

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0001755 IMP neural crest cell migration
GO:0001756 IMP somitogenesis
GO:0001843 IMP neural tube closure
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007417 IGI central nervous system development
GO:0021766 IMP hippocampus development
GO:0021846 IMP cell proliferation in forebrain
GO:0030177 IMP positive regulation of Wnt signaling pathway
GO:0043507 IMP positive regulation of JUN kinase activity
GO:0045636 IMP positive regulation of melanocyte differentiation
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0048023 IC positive regulation of melanin biosynthetic process
GO:0048066 IMP developmental pigmentation
GO:0048598 IGI embryonic morphogenesis
GO:0070412 IDA R-SMAD binding
GO:0097324 IMP melanocyte migration
GO:1903056 IMP regulation of melanosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000090019 zeb2b-201 protein_coding Danio_rerio 0 597
ENST00000303660 ZEB2-020 protein_coding Homo_sapiens 0 7703
ENST00000392861 ZEB2-007 protein_coding Homo_sapiens 0 2028
ENST00000409211 ZEB2-019 protein_coding Homo_sapiens 0 612
ENST00000409487 ZEB2-011 protein_coding Homo_sapiens 0 7899
ENST00000419938 ZEB2-013 protein_coding Homo_sapiens 0 1454
ENST00000427902 ZEB2-010 protein_coding Homo_sapiens 0 3199
ENST00000431672 ZEB2-008 protein_coding Homo_sapiens 0 579
ENST00000434448 ZEB2-018 processed_transcript Homo_sapiens 0 263
ENST00000435831 ZEB2-021 protein_coding Homo_sapiens 0 468
ENST00000440875 ZEB2-201 protein_coding Homo_sapiens 0 1799
ENST00000444559 ZEB2-014 protein_coding Homo_sapiens 0 383
ENST00000453352 ZEB2-017 processed_transcript Homo_sapiens 0 263
ENST00000461784 ZEB2-016 retained_intron Homo_sapiens 0 507
ENST00000462355 ZEB2-022 protein_coding Homo_sapiens 0 322
ENST00000464380 ZEB2-003 processed_transcript Homo_sapiens 4e-28 128
ENST00000465070 ZEB2-005 protein_coding Homo_sapiens 0 263
ENST00000465308 ZEB2-004 retained_intron Homo_sapiens 0 507
ENST00000470879 ZEB2-009 protein_coding Homo_sapiens 0 263
ENST00000472146 ZEB2-006 retained_intron Homo_sapiens 0 507
ENST00000475115 ZEB2-002 processed_transcript Homo_sapiens 5e-28 128
ENST00000476394 ZEB2-015 retained_intron Homo_sapiens 0 507
ENST00000484313 ZEB2-012 processed_transcript Homo_sapiens 0 263
ENST00000497268 ZEB2-027 retained_intron Homo_sapiens 0 529
ENST00000515048 ZEB2P1-001 transcribed_processed_pseudogene Homo_sapiens 0 1029
ENST00000539609 ZEB2-025 protein_coding Homo_sapiens 0 7103
ENST00000558170 ZEB2-001 protein_coding Homo_sapiens 0 7703

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