C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 4, retinal
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000097934 cdh4-201 ENSDARG00000015002 7955 + 11:21011516-21202573 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000097934
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000097934 5.435±5.35 0.465±0.20 0.189±0.14 0.042±0.00 0.553±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000693 CIL_000693_0001 CGP 11:21011516-21266548

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007156 IEA homophilic cell adhesion
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0021545 IMP cranial nerve development
GO:0042478 IMP regulation of eye photoreceptor cell development
GO:0048593 IMP camera-type eye morphogenesis
GO:0048925 IMP lateral line system development
GO:0060042 IMP retina morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000543233 CDH4-003 protein_coding Homo_sapiens 0 654
ENST00000611855 CDH4-002 protein_coding Homo_sapiens 0 654
ENST00000614565 CDH4-001 protein_coding Homo_sapiens 0 654

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