C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XXIII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102765 Col23a1-001 ENSMUSG00000063564 10090 + 11:51289920-51583918 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102765
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102765 0.585±0.12 0.647±0.25 1.127±0.18 2.315±0.49 0.734±0.59 2.044±0.19 0.284±0.19 0.756±0.20 0.084±0.07 11.572±0.91 0.406±0.11 1.678±0.54 1.291±1.36 0.303±0.24

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005886 TAS plasma membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000091307 col2a1a-201 protein_coding Danio_rerio 0.0001 55
ENSDART00000100234 col2a1a-001 protein_coding Danio_rerio 0.0001 55
ENST00000390654 COL23A1-001 protein_coding Homo_sapiens 0 1757
ENST00000407622 COL23A1-201 protein_coding Homo_sapiens 0 1376

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