C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type I, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001547 Col1a1-001 ENSMUSG00000001506 10090 + 11:94936224-94953042 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001547
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001547 134.760±61.12 15.898±1.33 459.065±21.58 22.221±21.97 117.790±36.15 41.238±9.48 18.409±4.88 10.770±1.08 4.858±4.56 42.319±2.96 14.399±5.91 95.137±29.68 91.807±73.28 6.039±2.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0002 VISTA 11:94580928-95183811

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001503 IEA ossification
GO:0001568 IMP blood vessel development
GO:0001649 IEP osteoblast differentiation
GO:0001957 IGI intramembranous ossification
GO:0001958 IMP endochondral ossification
GO:0005201 IDA extracellular matrix structural constituent
GO:0005515 IPI protein binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005581 IDA collagen trimer
GO:0005584 IMP collagen type I trimer
GO:0005615 IEA extracellular space
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0007584 IEA response to nutrient
GO:0007601 IEA visual perception
GO:0007605 IEA sensory perception of sound
GO:0009612 IEA response to mechanical stimulus
GO:0010718 IEA positive regulation of epithelial to mesenchymal transition
GO:0010812 IDA negative regulation of cell-substrate adhesion
GO:0015031 IMP protein transport
GO:0030141 IEA secretory granule
GO:0030199 IEA collagen fibril organization
GO:0030335 IEA positive regulation of cell migration
GO:0031012 IDA extracellular matrix
GO:0031667 IEA response to nutrient levels
GO:0031960 IEA response to corticosteroid
GO:0032355 IEA response to estradiol
GO:0032964 IEA collagen biosynthetic process
GO:0034504 IEA protein localization to nucleus
GO:0034505 IEA tooth mineralization
GO:0042060 IEA wound healing
GO:0042493 IEA response to drug
GO:0042542 IEA response to hydrogen peroxide
GO:0042802 IEA identical protein binding
GO:0043434 IEA response to peptide hormone
GO:0043588 IMP skin development
GO:0043589 IEA skin morphogenesis
GO:0044344 IEA cellular response to fibroblast growth factor stimulus
GO:0044691 IEA tooth eruption
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0048407 IEA platelet-derived growth factor binding
GO:0048545 IEA response to steroid hormone
GO:0048705 IGI skeletal system morphogenesis
GO:0048706 IEA embryonic skeletal system development
GO:0051591 IEA response to cAMP
GO:0055093 IEA response to hyperoxia
GO:0060325 IGI face morphogenesis
GO:0060346 IGI bone trabecula formation
GO:0060351 IMP cartilage development involved in endochondral bone morphogenesis
GO:0070208 IDA protein heterotrimerization
GO:0071230 IDA cellular response to amino acid stimulus
GO:0071260 IEP cellular response to mechanical stimulus
GO:0071300 IEA cellular response to retinoic acid
GO:0071306 IEA cellular response to vitamin E
GO:0071356 IEA cellular response to tumor necrosis factor
GO:0071364 IEA cellular response to epidermal growth factor stimulus
GO:0071560 IEA cellular response to transforming growth factor beta stimulus
GO:0090263 IEA positive regulation of canonical Wnt signaling pathway
GO:1902617 IEA response to fluoride
GO:1902618 IEA cellular response to fluoride

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009393 col1a1a-001 protein_coding Danio_rerio 0 2224
ENSDART00000047010 col1a1a-201 protein_coding Danio_rerio 0 2222
ENSDART00000091307 col2a1a-201 protein_coding Danio_rerio 0 1098
ENSDART00000100234 col2a1a-001 protein_coding Danio_rerio 0 1098
ENST00000225964 COL1A1-001 protein_coding Homo_sapiens 0 6213
ENST00000463440 COL1A1-005 retained_intron Homo_sapiens 0 215
ENST00000471344 COL1A1-006 retained_intron Homo_sapiens 0 833
ENST00000474644 COL1A1-002 retained_intron Homo_sapiens 0 283
ENST00000476387 COL1A1-007 retained_intron Homo_sapiens 0 822
ENST00000486572 COL1A1-009 retained_intron Homo_sapiens 0 213
ENST00000494334 COL1A1-008 retained_intron Homo_sapiens 0 224
ENST00000495677 COL1A1-003 retained_intron Homo_sapiens 0 544
ENST00000510710 COL1A1-018 retained_intron Homo_sapiens 0 612
ENST00000511732 COL1A1-016 retained_intron Homo_sapiens 6e-34 148

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