C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY-box containing gene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000104493 sox2-001 ENSDARG00000070913 7955 - 22:40333602-40335673 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000104493
Transcript ID Brain Heart Kidney Muscle
ENSDART00000104493 9.996±7.98 0.152±0.07 0.124±0.05 1.285±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MF CIL_0007MF_0003 UCNEbase 22:40035991-40568563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 IC transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0031101 IMP fin regeneration
GO:0048592 IMP eye morphogenesis
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099151 Sox2-001 protein_coding Mus_musculus 0 782
ENSMUST00000180353 Sox1-001 protein_coding Mus_musculus 0 259
ENST00000244745 SOX4-001 protein_coding Homo_sapiens 0.0000002 64
ENST00000325404 SOX2-001 protein_coding Homo_sapiens 0 797

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