C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, ATPase, 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000106191 psmc5-001 ENSDARG00000015315 7955 + 12:11242671-11254573 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000106191
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000106191 30.044±21.45 40.777±29.05 18.092±13.19 5.979±0.00 54.216±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000502 ISS proteasome complex
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0008134 ISS transcription factor binding
GO:0009378 IEA four-way junction helicase activity
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016787 IEA hydrolase activity
GO:0016887 IEA ATPase activity
GO:0017111 IEA nucleoside-triphosphatase activity
GO:0030163 IEA protein catabolic process
GO:0031531 ISS thyrotropin-releasing hormone receptor binding
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310144 PSMC5-001 protein_coding Homo_sapiens 0 1027
ENST00000375812 PSMC5-201 protein_coding Homo_sapiens 0 1011
ENST00000578570 PSMC5-005 retained_intron Homo_sapiens 0 1011
ENST00000579031 PSMC5-014 retained_intron Homo_sapiens 0 623
ENST00000579147 PSMC5-003 retained_intron Homo_sapiens 0 989
ENST00000580063 PSMC5-015 retained_intron Homo_sapiens 0 414
ENST00000580864 PSMC5-004 protein_coding Homo_sapiens 0 1011
ENST00000581882 PSMC5-006 protein_coding Homo_sapiens 0 1011
ENST00000584536 PSMC5-013 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000584880 PSMC5-016 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000585242 PSMC5-007 nonsense_mediated_decay Homo_sapiens 0 959

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