C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, ATPase, 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000585242 PSMC5-007 ENSG00000087191 9606 + 17:63827479-63831984 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLiverLungMuscleOvaryPlacentaTestisENST00000585242
Transcript ID Adipose Adrenal Brain Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000585242 46.442±0.00 55.811±0.00 70.643±0.00 19.267±16.88 69.223±0.00 26.092±0.00 22.011±0.00 24.829±19.47 32.866±25.52 36.092±9.02 74.419±7.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006Q4 CIL_0006Q4_0001 CGP 17:63773603-63830012
CIL_0006Q9 CIL_0006Q9_0001 CGP 17:63819433-63832026
CIL_0006QA CIL_0006QA_0001 CGP 17:63827152-63843065

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021049 Psmc5-001 protein_coding Mus_musculus 0 1384
ENSMUST00000133131 Psmc5-002 nonsense_mediated_decay Mus_musculus 0 1037
ENSDART00000106191 psmc5-001 protein_coding Danio_rerio 0 959

Loading