C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000110554 grin2ca-201 ENSDARG00000078149 7955 - 3:18827086-18912922 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000110554
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000110554 4.860±0.26 0.287±0.28 0.014±0.00 0.074±0.00 0.206±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0005215 IEA transporter activity
GO:0005216 IEA ion channel activity
GO:0005234 IEA extracellular-glutamate-gated ion channel activity
GO:0005886 IEA plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0030054 IEA cell junction
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293190 GRIN2C-001 protein_coding Homo_sapiens 0 850
ENST00000347612 GRIN2C-002 protein_coding Homo_sapiens 0 824
ENST00000584176 GRIN2C-004 retained_intron Homo_sapiens 0 516

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