C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, N-methyl D-aspartate 2C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000347612 GRIN2C-002 ENSG00000161509 9606 - 17:74844032-74860535 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartOvaryPlacentaTestisENST00000347612
Transcript ID Breast Colon Heart Ovary Placenta Testis
ENST00000347612 0.085±0.00 0.254±0.00 0.217±0.00 0.123±0.00 0.459±0.05 1.369±0.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000286 CIL_000286_0001 CGP 17:74776483-74861504
CIL_0001FN CIL_0001FN_0001 CGP 17:74842023-74873031

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0005234 IEA extracellular-glutamate-gated ion channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034220 IEA ion transmembrane transport
GO:0035235 IEA ionotropic glutamate receptor signaling pathway
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106554 Grin2c-201 protein_coding Mus_musculus 0 3245
ENSMUST00000003351 Grin2c-001 protein_coding Mus_musculus 0 3243
ENSMUST00000002848 Grin2d-001 protein_coding Mus_musculus 0 989
ENSDART00000110554 grin2ca-201 protein_coding Danio_rerio 0 824
ENSDART00000145215 grin2ca-001 protein_coding Danio_rerio 0 824

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