C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: strawberry notch homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000113907 sbno1-201 ENSDARG00000078969 7955 - 10:46453167-46467895 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000113907
Transcript ID Brain Heart Liver Muscle
ENSDART00000113907 5.027±3.51 1.822±1.49 4.449±0.00 4.527±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0016787 IEA hydrolase activity
GO:0021999 IMP neural plate anterior/posterior regionalization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267176 SBNO1-001 protein_coding Homo_sapiens 0 741
ENST00000361757 SBNO2-001 protein_coding Homo_sapiens 0 219
ENST00000420886 SBNO1-201 protein_coding Homo_sapiens 0 741
ENST00000438103 SBNO2-003 protein_coding Homo_sapiens 0 219
ENST00000587024 SBNO2-002 protein_coding Homo_sapiens 2e-30 139
ENST00000590446 SBNO2-013 retained_intron Homo_sapiens 2e-33 147
ENST00000592222 SBNO2-005 retained_intron Homo_sapiens 0 219
ENST00000602398 SBNO1-002 protein_coding Homo_sapiens 0 741
ENST00000612198 SBNO2-201 protein_coding Homo_sapiens 0 219
ENST00000622719 SBNO2-202 protein_coding Homo_sapiens 0 219

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