C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: strawberry notch homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000602398 SBNO1-002 ENSG00000139697 9606 - 12:123295905-123364828 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000602398
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000602398 2.100±0.00 3.629±0.00 4.370±1.76 6.816±0.00 7.870±0.00 2.733±0.17 4.431±0.00 6.282±0.00 6.386±0.00 2.729±1.14 6.281±3.58 3.028±2.51 36.077±20.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0001 VISTA 12:122762377-123367178
CIL_0003J6 CIL_0003J6_0001 CGP 12:123260971-123364843
CIL_000665 CIL_000665_0001 CGP 12:123289109-123409358

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0003824 IEA catalytic activity
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0016491 IEA oxidoreductase activity
GO:0016787 IEA hydrolase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168651 Sbno1-202 protein_coding Mus_musculus 0 5424
ENSMUST00000065263 Sbno1-201 protein_coding Mus_musculus 0 5341
ENSDART00000113907 sbno1-201 protein_coding Danio_rerio 0 741
ENSMUST00000055334 Hoxb3-001 protein_coding Mus_musculus 0.00002 57
ENSMUST00000093944 Hoxb3-002 protein_coding Mus_musculus 0.00002 57

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