C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hyperpolarization activated cyclic nucleotide-gated potassium channel 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000113932 HCN1-201 ENSDARG00000077190 7955 - 17:1790906-1966928 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartMuscleENSDART00000113932
Transcript ID Brain Heart Muscle
ENSDART00000113932 9.174±2.06 0.065±0.00 0.556±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029686 Hcn3-001 protein_coding Mus_musculus 0 723
ENSMUST00000034889 Hcn4-201 protein_coding Mus_musculus 0 992
ENSMUST00000127654 Hcn3-004 retained_intron Mus_musculus 0 326
ENSMUST00000132156 Hcn3-003 retained_intron Mus_musculus 0 401
ENST00000251287 HCN2-001 protein_coding Homo_sapiens 0 1057
ENST00000368358 HCN3-001 protein_coding Homo_sapiens 0 787
ENST00000467204 HCN3-003 processed_transcript Homo_sapiens 0 315
ENST00000496230 HCN3-002 processed_transcript Homo_sapiens 0 359
ENST00000568218 RP13-395E19.2-001 processed_pseudogene Homo_sapiens 0 887
ENST00000569415 RP11-261B23.1-001 processed_pseudogene Homo_sapiens 0 881
ENST00000572822 HCN3-002 processed_transcript Homo_sapiens 0 359
ENST00000575670 HCN3-001 protein_coding Homo_sapiens 0 787
ENST00000576844 HCN3-003 processed_transcript Homo_sapiens 0 315

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