C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000115117 brd4-001 ENSDARG00000078904 7955 + 3:53754194-53862302 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000115117
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000115117 5.829±5.23 2.076±0.07 3.361±0.87 0.893±0.00 4.542±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DW CIL_0004DW_0001 CGP 3:53735609-53869362

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000793 IDA condensed chromosome
GO:0002039 ISS p53 binding
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0016568 IEA chromatin modification
GO:0032968 ISS positive regulation of transcription elongation from RNA polymerase II promoter
GO:0042393 IDA histone binding
GO:0043123 ISS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0050727 ISS regulation of inflammatory response
GO:0070577 ISS histone acetyl-lysine binding
GO:1901407 ISS regulation of phosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003726 Brd4-201 protein_coding Mus_musculus 0 276
ENSMUST00000114475 Brd4-202 protein_coding Mus_musculus 0 276
ENSMUST00000119123 Brd4-004 protein_coding Mus_musculus 0 276
ENSMUST00000120276 Brd4-005 protein_coding Mus_musculus 0 276
ENSMUST00000121285 Brd4-003 protein_coding Mus_musculus 0 276
ENSMUST00000125899 Brd4-002 nonsense_mediated_decay Mus_musculus 0 276
ENSMUST00000127893 Brd4-001 protein_coding Mus_musculus 0 276
ENST00000303407 BRD3-001 protein_coding Homo_sapiens 0 198
ENST00000371834 BRD3-002 protein_coding Homo_sapiens 0 198
ENST00000494743 BRD3-006 retained_intron Homo_sapiens 4e-24 115

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