C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004DW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000078364-ENSDARG00000078904 CGP 7955 3:53735609-53869362
GeneTranscriptPositionBiotype
ENSDARG00000078364 (AL954361.1)
Uncharacterized protein 		ENSDART00000109390 (AL954361.1-201) 53735609-53752321 protein_coding
ENSDARG00000078904 (brd4)
bromodomain containing 4 		ENSDART00000114343 (brd4-201) 53830531-53869362 protein_coding
ENSDART00000115117 (brd4-001) 53754194-53862302 protein_coding
ENSDARG00000098017 (PET100)
PET100 homolog (S. cerevisiae) 		ENSDART00000156490 (PET100-001) 53866706-53869366 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004DW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105131-ENSG00000141867 CGP 9606 19:15226919-15332545
GeneTranscriptPositionBiotype
ENSG00000105131 (EPHX3)
epoxide hydrolase 3 		ENST00000221730 (EPHX3-002) 15226919-15232432 protein_coding
ENST00000435261 (EPHX3-201) 15226922-15233047 protein_coding
ENST00000594042 (EPHX3-003) 15231349-15233047 protein_coding
ENST00000602233 (EPHX3-001) 15226925-15233435 protein_coding
ENSG00000141867 (BRD4)
bromodomain containing 4 		ENST00000263377 (BRD4-001) 15235519-15280451 protein_coding
ENST00000360016 (BRD4-003) 15252992-15332545 protein_coding
ENST00000371835 (BRD4-002) 15247047-15280451 protein_coding
ENST00000594066 (BRD4-011) 15244523-15246618 retained_intron
ENST00000594841 (BRD4-004) 15256099-15331906 protein_coding
ENST00000594842 (BRD4-009) 15256208-15257315 retained_intron
ENST00000595926 (BRD4-010) 15253751-15255366 retained_intron
ENST00000597315 (BRD4-005) 15265627-15332443 nonsense_mediated_decay
ENST00000601071 (BRD4-006) 15267514-15272981 processed_transcript
ENST00000601941 (BRD4-008) 15269013-15331907 protein_coding
ENST00000602230 (BRD4-007) 15256135-15264400 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0004DW_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037577-ENSMUSG00000024002 CGP 10090 17:32183770-32284722
GeneTranscriptPositionBiotype
ENSMUSG00000024002 (Brd4)
bromodomain containing 4 		ENSMUST00000003726 (Brd4-201) 32196276-32284097 protein_coding
ENSMUST00000114475 (Brd4-202) 32206679-32284123 protein_coding
ENSMUST00000119123 (Brd4-004) 32196274-32284097 protein_coding
ENSMUST00000120276 (Brd4-005) 32204910-32284109 protein_coding
ENSMUST00000121285 (Brd4-003) 32196274-32284109 protein_coding
ENSMUST00000125899 (Brd4-002) 32213645-32284677 nonsense_mediated_decay
ENSMUST00000127893 (Brd4-001) 32213610-32284722 protein_coding
ENSMUSG00000037577 (Ephx3)
epoxide hydrolase 3 		ENSMUST00000087721 (Ephx3-001) 32183770-32189463 protein_coding
ENSMUST00000162117 (Ephx3-002) 32184661-32189549 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004DW_0001ENSDARG00000078364ENSDART00000109390ENSDARG00000078904ENSDART00000114343ENSDART00000115117ENSDARG00000098017ENSDART00000156490CIL_0004DW_0002ENSG00000105131ENST00000221730ENST00000435261ENST00000594042ENST00000602233ENSG00000141867ENST00000263377ENST00000360016ENST00000371835ENST00000594066ENST00000594841ENST00000594842ENST00000595926ENST00000597315ENST00000601071ENST00000601941ENST00000602230CIL_0004DW_0003ENSMUSG00000024002ENSMUST00000003726ENSMUST00000114475ENSMUST00000119123ENSMUST00000120276ENSMUST00000121285ENSMUST00000125899ENSMUST00000127893ENSMUSG00000037577ENSMUST00000087721ENSMUST00000162117
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004DW_0001ENSDARG00000078364ENSDART00000109390ENSDARG00000078904ENSDART00000114343ENSDART00000115117ENSDARG00000098017ENSDART00000156490CIL_0004DW_0002ENSG00000105131ENST00000221730ENST00000435261ENST00000594042ENST00000602233ENSG00000141867ENST00000263377ENST00000360016ENST00000371835ENST00000594841ENST00000597315ENST00000601071ENST00000601941CIL_0004DW_0003ENSMUSG00000024002ENSMUST00000003726ENSMUST00000114475ENSMUST00000119123ENSMUST00000120276ENSMUST00000121285ENSMUST00000127893ENSMUSG00000037577ENSMUST00000087721ENSMUST00000162117
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000078364 ENSDART00000109390 N/A N/A N/A 0.056±0.00 N/A N/A 0.605±0.06 0.069±0.00 0.077±0.00 N/A 0.632±0.00 N/A N/A N/A
ENSDARG00000078904 ENSDART00000114343 N/A N/A N/A N/A N/A N/A N/A N/A 0.357±0.00 N/A N/A N/A N/A N/A
ENSDART00000115117 N/A N/A N/A 5.829±5.23 N/A N/A 2.076±0.07 3.361±0.87 0.893±0.00 N/A 4.542±0.00 N/A N/A N/A
ENSDARG00000098017 ENSDART00000156490 N/A N/A N/A 8.737±5.31 N/A N/A 4.804±5.09 9.657±2.37 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105131 ENST00000221730 0.227±0.00 N/A N/A 0.164±0.00 N/A 0.089±0.00 0.040±0.00 0.903±0.00 0.026±0.00 1.748±0.00 N/A 8.732±8.30 0.277±0.10 0.746±0.12
ENST00000435261 N/A N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A N/A N/A 3.210±0.00 0.200±0.00 0.668±0.00
ENST00000594042 N/A N/A N/A 0.230±0.00 N/A 0.221±0.02 N/A N/A 0.069±0.00 N/A N/A 2.499±0.00 0.647±0.00 N/A
ENST00000602233 N/A 0.908±0.00 N/A N/A 0.415±0.00 0.029±0.00 N/A N/A N/A N/A N/A 0.935±0.00 N/A N/A
ENSG00000141867 ENST00000263377 N/A 6.727±0.00 N/A 0.769±0.00 N/A 0.470±0.00 N/A 0.766±0.00 N/A 0.390±0.00 N/A 0.545±0.00 10.887±5.83 10.163±0.00
ENST00000360016 N/A N/A N/A N/A N/A N/A 0.151±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000371835 N/A N/A N/A N/A 0.748±0.00 0.945±0.00 N/A 1.131±0.00 2.970±2.45 N/A 0.693±0.00 7.271±6.27 12.385±0.00 N/A
ENST00000594066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594841 N/A N/A 2.102±0.00 1.065±0.00 2.093±0.00 N/A 0.706±0.00 0.938±0.00 N/A N/A N/A N/A N/A N/A
ENST00000594842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597315 N/A N/A N/A N/A N/A N/A 0.667±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000601071 N/A N/A N/A N/A N/A N/A N/A 5.981±0.00 N/A N/A N/A N/A N/A N/A
ENST00000601941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.074±0.00 N/A N/A N/A
ENST00000602230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024002 ENSMUST00000003726 2.355±0.00 1.502±0.11 N/A N/A 2.120±0.80 3.998±1.38 0.795±0.16 1.663±0.41 1.736±0.53 2.457±0.72 N/A 4.426±1.93 N/A 0.794±0.16
ENSMUST00000114475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.705±0.00
ENSMUST00000119123 1.564±0.00 5.366±3.38 N/A N/A 2.061±1.38 2.792±1.17 N/A 1.134±0.00 N/A 3.528±0.04 N/A N/A N/A N/A
ENSMUST00000120276 2.138±0.48 N/A N/A N/A 1.415±0.00 N/A 1.130±0.16 2.124±0.00 1.728±0.62 N/A N/A N/A 4.897±2.09 0.955±0.07
ENSMUST00000121285 2.812±0.76 1.276±0.00 6.347±4.57 12.778±7.31 3.013±1.08 5.055±0.00 1.820±0.40 3.545±1.46 4.138±2.83 3.757±1.33 2.943±0.77 10.541±6.45 15.993±9.05 1.958±0.80
ENSMUST00000125899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127893 N/A N/A N/A N/A N/A 6.648±1.66 N/A N/A N/A N/A N/A 7.306±1.48 N/A N/A
ENSMUSG00000037577 ENSMUST00000087721 0.427±0.43 N/A 0.334±0.06 0.062±0.00 0.375±0.24 0.151±0.07 0.293±0.08 0.137±0.07 0.061±0.03 1.692±0.17 0.133±0.03 0.261±0.16 0.087±0.03 0.045±0.01
ENSMUST00000162117 1.666±0.90 0.517±0.15 1.338±0.01 0.109±0.05 1.096±0.28 0.339±0.17 0.603±0.29 0.399±0.12 0.083±0.04 3.784±2.32 0.196±0.10 0.369±0.19 0.066±0.03 0.063±0.02

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