C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, O
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000122021 ptpro-204 ENSDARG00000022297 7955 + 19:46866733-46893772 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverENSDART00000122021
Transcript ID Brain Heart Kidney Liver
ENSDART00000122021 25.396±0.00 0.201±0.00 0.073±0.00 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VB CIL_0005VB_0001 CGP 19:46866733-46927512

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004721 IEA phosphoprotein phosphatase activity
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0006470 IEA protein dephosphorylation
GO:0007417 IMP central nervous system development
GO:0008138 IEA protein tyrosine/serine/threonine phosphatase activity
GO:0016311 IEA dephosphorylation
GO:0016787 IEA hydrolase activity
GO:0016791 IEA phosphatase activity
GO:0021587 IMP cerebellum morphogenesis
GO:0040036 IMP regulation of fibroblast growth factor receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359947 PTPRF-001 protein_coding Homo_sapiens 0.0000008 62
ENST00000372407 PTPRF-005 protein_coding Homo_sapiens 0.0000005 62
ENST00000412568 PTPRF-014 protein_coding Homo_sapiens 0.0000005 62
ENST00000414879 PTPRF-006 protein_coding Homo_sapiens 0.0000005 62
ENST00000429895 PTPRF-015 protein_coding Homo_sapiens 0.0000007 62
ENST00000438120 PTPRF-002 protein_coding Homo_sapiens 0.0000007 62
ENST00000477970 PTPRF-007 processed_transcript Homo_sapiens 0.0000004 62
ENST00000496447 PTPRF-008 processed_transcript Homo_sapiens 0.0000006 62

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