C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372407 PTPRF-005 ENSG00000142949 9606 + 1:43598839-43623663 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000372407
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000372407 7.145±0.00 2.485±0.00 8.531±7.58 31.051±0.00 12.007±0.00 0.356±0.14 15.219±0.00 29.185±0.00 6.699±4.92 4.413±1.92 26.455±0.00 7.373±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005B6 CIL_0005B6_0002 CGP 1:43451003-43623666
CIL_0005B7 CIL_0005B7_0002 CGP 1:43525187-43705515

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005515 IEA protein binding
GO:0006470 IEA protein dephosphorylation
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000150096 Ptprf-002 protein_coding Mus_musculus 0 4346
ENSMUST00000124758 Ptprf-003 protein_coding Mus_musculus 0 4108
ENSMUST00000049074 Ptprf-001 protein_coding Mus_musculus 0 3672
ENSMUST00000123484 Ptprf-004 processed_transcript Mus_musculus 0 1696
ENSMUST00000086828 Ptprs-002 protein_coding Mus_musculus 0 1528
ENSMUST00000067538 Ptprs-001 protein_coding Mus_musculus 0 1528
ENSDART00000083314 ptprfb-001 protein_coding Danio_rerio 0 1448
ENSDART00000026738 ptprfa-201 protein_coding Danio_rerio 0 1397
ENSDART00000142544 ptprfa-001 protein_coding Danio_rerio 0 1397
ENSDART00000050551 ptprsb-201 protein_coding Danio_rerio 0 1269
ENSDART00000083308 ptprsa-201 protein_coding Danio_rerio 0 1262
ENSDART00000145114 ptprsa-001 protein_coding Danio_rerio 0 1262
ENSDART00000065586 ptprda-201 protein_coding Danio_rerio 0 749
ENSDART00000128634 ptprda-202 protein_coding Danio_rerio 0 331
ENSDART00000122021 ptpro-204 protein_coding Danio_rerio 0.0000005 62

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