C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438120 PTPRF-002 ENSG00000142949 9606 + 1:43530890-43622357 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000438120
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000438120 0.841±0.00 8.543±0.00 12.540±10.48 8.196±0.00 0.089±0.00 6.434±0.00 2.180±0.00 0.189±0.00 1.484±0.00 12.412±4.03 2.313±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005B6 CIL_0005B6_0002 CGP 1:43451003-43623666
CIL_0005B7 CIL_0005B7_0002 CGP 1:43525187-43705515

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IDA:IEA protein tyrosine phosphatase activity
GO:0005001 TAS transmembrane receptor protein tyrosine phosphatase activity
GO:0005515 IEA protein binding
GO:0005887 TAS integral component of plasma membrane
GO:0006470 IEA protein dephosphorylation
GO:0007155 IEA cell adhesion
GO:0007185 TAS transmembrane receptor protein tyrosine phosphatase signaling pathway
GO:0008201 IEA heparin binding
GO:0016311 IEA dephosphorylation
GO:0016477 IMP cell migration
GO:0016791 IEA phosphatase activity
GO:0035335 IMP peptidyl-tyrosine dephosphorylation
GO:0070062 IDA extracellular vesicular exosome
GO:1900121 IMP negative regulation of receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049074 Ptprf-001 protein_coding Mus_musculus 0 7618
ENSMUST00000124758 Ptprf-003 protein_coding Mus_musculus 0 2678
ENSMUST00000150096 Ptprf-002 protein_coding Mus_musculus 0 2678
ENSMUST00000123484 Ptprf-004 processed_transcript Mus_musculus 0 1707
ENSMUST00000086828 Ptprs-002 protein_coding Mus_musculus 0 1568
ENSMUST00000067538 Ptprs-001 protein_coding Mus_musculus 0 1568
ENSDART00000083314 ptprfb-001 protein_coding Danio_rerio 0 1539
ENSDART00000026738 ptprfa-201 protein_coding Danio_rerio 0 1507
ENSDART00000142544 ptprfa-001 protein_coding Danio_rerio 0 1507
ENSDART00000083308 ptprsa-201 protein_coding Danio_rerio 0 1291
ENSDART00000145114 ptprsa-001 protein_coding Danio_rerio 0 1291
ENSDART00000050551 ptprsb-201 protein_coding Danio_rerio 0 1269
ENSDART00000065586 ptprda-201 protein_coding Danio_rerio 0 749
ENSMUST00000143348 Ptprf-005 processed_transcript Mus_musculus 0 641
ENSDART00000128634 ptprda-202 protein_coding Danio_rerio 0 331
ENSDART00000122021 ptpro-204 protein_coding Danio_rerio 0.0000007 62

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