C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 53 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000122184 vps53-001 ENSDARG00000069324 7955 - 15:24454277-24506951 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000122184
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000122184 10.784±0.99 3.136±0.08 5.670±0.00 0.199±0.00 1.322±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AN CIL_0006AN_0001 CGP 15:24449580-24506951

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056601 Vps53-001 protein_coding Mus_musculus 0 1463
ENSMUST00000108419 Vps53-014 protein_coding Mus_musculus 0 464
ENSMUST00000141773 Vps53-004 processed_transcript Mus_musculus 0 302
ENSMUST00000143459 Vps53-005 processed_transcript Mus_musculus 0 276
ENSMUST00000166084 Vps53-011 processed_transcript Mus_musculus 0 403
ENSMUST00000166436 Vps53-009 protein_coding Mus_musculus 0 398
ENSMUST00000166752 Vps53-015 nonsense_mediated_decay Mus_musculus 0 464
ENSMUST00000169734 Vps53-012 nonsense_mediated_decay Mus_musculus 0 1229
ENSMUST00000170143 Vps53-008 retained_intron Mus_musculus 0 464
ENSMUST00000170730 Vps53-007 protein_coding Mus_musculus 0 200

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