C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0006AN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000093931-ENSDARG00000069324 CGP 7955 15:24449580-24506951
GeneTranscriptPositionBiotype
ENSDARG00000069324 (vps53)
vacuolar protein sorting 53 homolog (S. cerevisiae)
ENSDART00000078095 (vps53-201) 24454277-24506894 protein_coding
ENSDART00000122184 (vps53-001) 24454277-24506951 protein_coding
CIL_0006AN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183688-ENSG00000141252 CGP 9606 17:439978-721717
GeneTranscriptPositionBiotype
ENSG00000141252 (VPS53)
vacuolar protein sorting 53 homolog (S. cerevisiae)
ENST00000291074 (VPS53-002) 532318-714843 protein_coding
ENST00000389040 (VPS53-004) 532827-714709 nonsense_mediated_decay
ENST00000401468 (VPS53-003) 532827-714709 protein_coding
ENST00000437048 (VPS53-001) 508668-714856 protein_coding
ENST00000541903 (VPS53-017) 519119-522995 processed_transcript
ENST00000570359 (VPS53-010) 536424-539204 retained_intron
ENST00000570510 (VPS53-012) 697418-714513 processed_transcript
ENST00000570650 (VPS53-019) 600880-628231 protein_coding
ENST00000570771 (VPS53-018) 519855-532993 retained_intron
ENST00000571456 (VPS53-021) 705625-714814 processed_transcript
ENST00000571805 (VPS53-006) 532708-714846 protein_coding
ENST00000572259 (VPS53-014) 674367-676345 retained_intron
ENST00000572334 (VPS53-013) 631550-685195 processed_transcript
ENST00000572607 (VPS53-016) 551634-562686 retained_intron
ENST00000573028 (VPS53-005) 531968-714856 nonsense_mediated_decay
ENST00000574029 (VPS53-020) 517382-714830 protein_coding
ENST00000575100 (VPS53-022) 673696-675667 retained_intron
ENST00000575207 (VPS53-015) 657429-714791 processed_transcript
ENST00000576019 (VPS53-011) 653326-721717 protein_coding
ENST00000576149 (VPS53-009) 518953-676407 processed_transcript
ENSG00000183688 (FAM101B)
family with sequence similarity 101, member B
ENST00000329099 (FAM101B-001) 439978-445939 protein_coding
ENSG00000262708 (RP11-411G7.2)
ENST00000574104 (RP11-411G7.2-001) 616002-616595 processed_pseudogene
ENSG00000263300 (RP5-1029F21.4)
ENST00000570974 (RP5-1029F21.4-001) 523140-540576 antisense
CIL_0006AN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020846-ENSMUSG00000017288 CGP 10090 11:76019194-76179647
GeneTranscriptPositionBiotype
ENSMUSG00000017286 (Glod4)
glyoxalase domain containing 4
ENSMUST00000017430 (Glod4-001) 76221510-76243725 protein_coding
ENSMUST00000164022 (Glod4-007) 76233244-76243610 protein_coding
ENSMUST00000167883 (Glod4-009) 76234247-76239572 retained_intron
ENSMUST00000168055 (Glod4-008) 76237713-76243638 protein_coding
ENSMUST00000169532 (Glod4-003) 76120987-76243675 retained_intron
ENSMUST00000169701 (Glod4-002) 76210571-76243663 protein_coding
ENSMUST00000170017 (Glod4-005) 76221607-76243651 nonsense_mediated_decay
ENSMUST00000170590 (Glod4-006) 76234519-76243669 nonsense_mediated_decay
ENSMUST00000170710 (Glod4-004) 76221794-76243459 protein_coding
ENSMUSG00000017288 (Vps53)
vacuolar protein sorting 53 (yeast)
ENSMUST00000056601 (Vps53-001) 76046226-76179647 protein_coding
ENSMUST00000094015 (Vps53-013) 76046297-76179617 protein_coding
ENSMUST00000108419 (Vps53-014) 76046296-76179624 protein_coding
ENSMUST00000129256 (Vps53-002) 76176959-76179638 protein_coding
ENSMUST00000140886 (Vps53-003) 76170514-76179612 processed_transcript
ENSMUST00000141773 (Vps53-004) 76121568-76138748 processed_transcript
ENSMUST00000143163 (Vps53-006) 76062041-76092679 retained_intron
ENSMUST00000143459 (Vps53-005) 76134432-76154969 processed_transcript
ENSMUST00000163878 (Vps53-010) 76117059-76179532 nonsense_mediated_decay
ENSMUST00000166084 (Vps53-011) 76121563-76175792 processed_transcript
ENSMUST00000166436 (Vps53-009) 76117674-76166201 protein_coding
ENSMUST00000166752 (Vps53-015) 76062985-76179499 nonsense_mediated_decay
ENSMUST00000167114 (Vps53-016) 76062980-76179499 protein_coding
ENSMUST00000169734 (Vps53-012) 76062985-76179516 nonsense_mediated_decay
ENSMUST00000170143 (Vps53-008) 76121447-76179587 retained_intron
ENSMUST00000170730 (Vps53-007) 76136199-76179634 protein_coding
ENSMUSG00000020846 (Fam101b)
family with sequence similarity 101, member B
ENSMUST00000021207 (Fam101b-001) 76019194-76027782 protein_coding
ENSMUSG00000080701 (Gm12340)
predicted gene 12340
ENSMUST00000121617 (Gm12340-001) 76144258-76144719 unprocessed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006AN_0001ENSDARG00000069324ENSDART00000078095ENSDART00000122184CIL_0006AN_0002ENSG00000141252ENST00000291074ENST00000389040ENST00000401468ENST00000437048ENST00000541903ENST00000570359ENST00000570510ENST00000570650ENST00000570771ENST00000571456ENST00000571805ENST00000572259ENST00000572334ENST00000572607ENST00000573028ENST00000574029ENST00000575100ENST00000575207ENST00000576019ENST00000576149ENSG00000183688ENST00000329099ENSG00000262708ENST00000574104ENSG00000263300ENST00000570974CIL_0006AN_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006AN_0001ENSDARG00000069324ENSDART00000078095ENSDART00000122184CIL_0006AN_0002ENSG00000141252ENST00000291074ENST00000389040ENST00000437048ENST00000571805ENST00000576019ENST00000576149ENSG00000183688ENST00000329099ENSG00000262708ENST00000574104ENSG00000263300ENST00000570974CIL_0006AN_0003ENSMUSG00000017286ENSMUST00000017430ENSMUST00000169701ENSMUST00000170017ENSMUSG00000017288ENSMUST00000056601ENSMUST00000094015ENSMUST00000108419ENSMUST00000167114ENSMUSG00000020846ENSMUST00000021207ENSMUSG00000080701ENSMUST00000121617
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000069324 ENSDART00000078095 N/A N/A N/A 31.269±1.75 N/A N/A 4.568±0.31 2.812±1.10 N/A N/A N/A N/A N/A N/A
ENSDART00000122184 N/A N/A N/A 10.784±0.99 N/A N/A 3.136±0.08 5.670±0.00 0.199±0.00 N/A 1.322±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000141252 ENST00000291074 N/A N/A N/A N/A N/A N/A N/A N/A 1.225±0.00 N/A N/A N/A N/A N/A
ENST00000389040 6.212±0.00 N/A N/A 2.991±0.00 6.459±0.00 3.304±0.00 2.509±0.00 N/A N/A N/A N/A 1.770±0.00 N/A N/A
ENST00000401468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437048 2.314±0.00 2.952±0.00 N/A 4.005±2.66 1.454±0.71 1.666±0.00 N/A 3.014±0.00 0.927±0.00 1.746±0.00 1.695±1.08 1.020±0.45 0.818±0.22 3.746±0.78
ENST00000541903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571805 N/A N/A 1.890±0.00 2.337±0.00 N/A N/A 1.339±0.00 N/A 1.442±0.00 2.777±0.00 1.824±0.00 1.689±0.00 1.284±0.01 N/A
ENST00000572259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000572607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.484±0.00 13.260±0.00 33.392±0.00
ENST00000576149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.986±0.00 2.700±0.00 1.930±0.81 N/A
ENSG00000183688 ENST00000329099 33.589±0.00 10.534±0.00 0.297±0.00 1.288±0.99 6.322±4.59 4.550±3.68 4.015±3.45 3.809±3.16 2.788±0.00 7.847±6.72 0.824±0.72 3.335±2.85 14.484±0.66 4.553±2.91
ENSG00000262708 ENST00000574104 N/A 0.094±0.00 0.210±0.00 N/A 0.273±0.00 N/A 0.044±0.00 N/A 0.192±0.00 0.285±0.00 N/A 0.050±0.00 N/A 0.084±0.00
ENSG00000263300 ENST00000570974 0.162±0.00 0.641±0.00 N/A 0.326±0.00 0.290±0.16 0.206±0.00 0.158±0.00 0.220±0.00 0.341±0.00 0.370±0.00 0.240±0.20 0.151±0.07 N/A 1.021±0.12
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017286 ENSMUST00000017430 N/A N/A 18.743±0.23 17.733±0.00 N/A N/A 12.605±0.00 N/A 17.461±5.70 N/A 6.834±2.53 22.094±5.63 17.580±4.12 N/A
ENSMUST00000164022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169701 N/A 3.646±0.76 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.320±1.40 8.770±0.00 N/A
ENSMUST00000170017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.671±3.08 N/A N/A
ENSMUST00000170590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000017288 ENSMUST00000056601 N/A N/A 13.307±0.37 16.919±8.61 N/A N/A N/A 8.722±0.44 6.285±1.05 N/A 6.232±0.60 14.750±0.78 19.578±6.72 N/A
ENSMUST00000094015 6.493±0.00 N/A N/A N/A 6.036±1.40 N/A 3.715±0.89 N/A 5.199±0.13 4.755±0.00 N/A N/A N/A N/A
ENSMUST00000108419 7.872±0.00 7.955±0.75 N/A N/A 6.853±0.74 14.831±3.67 N/A 7.410±0.51 5.968±0.00 4.997±0.00 N/A 9.578±1.54 N/A N/A
ENSMUST00000129256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167114 N/A 9.880±0.65 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020846 ENSMUST00000021207 35.204±14.26 22.768±4.47 11.936±0.64 2.242±0.70 26.652±9.48 41.188±3.81 11.143±1.02 10.064±0.29 1.402±1.42 10.872±1.11 4.584±1.51 10.999±2.45 32.661±30.46 0.406±0.12
ENSMUSG00000080701 ENSMUST00000121617 0.221±0.09 N/A 0.077±0.00 0.147±0.03 0.217±0.04 0.280±0.11 N/A 0.168±0.06 0.191±0.21 0.165±0.07 N/A 0.477±0.07 0.213±0.00 0.151±0.05

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