C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 53 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056601 Vps53-001 ENSMUSG00000017288 10090 - 11:76046226-76179647 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverMuscleOvaryPlacentaENSMUST00000056601
Transcript ID Bladder Brain Kidney Liver Muscle Ovary Placenta
ENSMUST00000056601 13.307±0.37 16.919±8.61 8.722±0.44 6.285±1.05 6.232±0.60 14.750±0.78 19.578±6.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AN CIL_0006AN_0003 CGP 11:76019194-76179647

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000938 IEA GARP complex
GO:0005515 IEA protein binding
GO:0005768 IEA endosome
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122184 vps53-001 protein_coding Danio_rerio 0 1463
ENST00000291074 VPS53-002 protein_coding Homo_sapiens 0 2194
ENST00000389040 VPS53-004 nonsense_mediated_decay Homo_sapiens 0 1149
ENST00000401468 VPS53-003 protein_coding Homo_sapiens 0 1253
ENST00000437048 VPS53-001 protein_coding Homo_sapiens 0 3177
ENST00000541903 VPS53-017 processed_transcript Homo_sapiens 0 488
ENST00000570359 VPS53-010 retained_intron Homo_sapiens 0 202
ENST00000570510 VPS53-012 processed_transcript Homo_sapiens 0 254
ENST00000570650 VPS53-019 protein_coding Homo_sapiens 0 654
ENST00000570771 VPS53-018 retained_intron Homo_sapiens 0 368
ENST00000571805 VPS53-006 protein_coding Homo_sapiens 0 2691
ENST00000572334 VPS53-013 processed_transcript Homo_sapiens 0 527
ENST00000572607 VPS53-016 retained_intron Homo_sapiens 0 658
ENST00000573028 VPS53-005 nonsense_mediated_decay Homo_sapiens 0 1890
ENST00000575207 VPS53-015 processed_transcript Homo_sapiens 0 497
ENST00000576019 VPS53-011 protein_coding Homo_sapiens 0 640
ENST00000576149 VPS53-009 processed_transcript Homo_sapiens 0 1613

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