C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GLI-Kruppel family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000123101 gli1-202 ENSDARG00000033680 7955 + 1:30726797-30746919 protein_coding

Danio rerio EnsemblZv9

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000123101
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000123101 0.505±0.21 0.083±0.05 0.278±0.06 0.032±0.00 0.025±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0007420 IMP brain development
GO:0021508 IGI floor plate formation
GO:0021521 IMP ventral spinal cord interneuron specification
GO:0021983 IMP pituitary gland development
GO:0021984 IMP adenohypophysis development
GO:0030182 IMP neuron differentiation
GO:0031290 IMP retinal ganglion cell axon guidance
GO:0035301 IDA Hedgehog signaling complex
GO:0042476 IMP odontogenesis
GO:0045880 IGI positive regulation of smoothened signaling pathway
GO:0046872 IEA metal ion binding
GO:0048699 IMP generation of neurons
GO:0048855 IMP adenohypophysis morphogenesis
GO:0050767 IGI regulation of neurogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026474 Gli1-201 protein_coding Mus_musculus 0 305
ENSMUST00000110510 Gli3-001 protein_coding Mus_musculus 0 399
ENSMUST00000130065 Gli3-003 protein_coding Mus_musculus 0 298
ENST00000314490 GLI2-201 protein_coding Homo_sapiens 0 405
ENST00000341310 GLI2-006 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000361492 GLI2-202 protein_coding Homo_sapiens 0 405
ENST00000435313 GLI2-008 processed_transcript Homo_sapiens 0 405
ENST00000437950 GLI2-004 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000438299 GLI2-001 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000445186 GLI2-005 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000452319 GLI2-009 protein_coding Homo_sapiens 0 405
ENST00000452692 GLI2-002 nonsense_mediated_decay Homo_sapiens 0 405

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