C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: RAD23 homolog B (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000124615 rad23b-201 ENSDARG00000021550 7955 + 21:574687-602359 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000124615
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000124615 15.329±8.23 25.932±25.36 9.099±9.90 6.304±0.00 50.663±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001FS CIL_0001FS_0001 CGP 21:537753-602359
CIL_000225 CIL_000225_0001 CGP 21:574687-627555

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003684 IEA damaged DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006289 IEA nucleotide-excision repair
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316856 RAD23A-001 protein_coding Homo_sapiens 0 206
ENST00000586375 RAD23A-010 nonsense_mediated_decay Homo_sapiens 0 206
ENST00000586534 RAD23A-002 protein_coding Homo_sapiens 0 207
ENST00000590881 RAD23A-008 protein_coding Homo_sapiens 2e-35 154
ENST00000591467 RAD23A-009 retained_intron Homo_sapiens 2e-22 110
ENST00000591499 RAD23A-003 nonsense_mediated_decay Homo_sapiens 0 207
ENST00000593114 RAD23A-004 nonsense_mediated_decay Homo_sapiens 0 206

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