C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000125630 pcdh17-201 ENSDARG00000027041 7955 - 11:33389437-33535501 protein_coding

Danio rerio EnsemblZv9

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Genes
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartMuscleENSDART00000125630
Transcript ID Brain Heart Muscle
ENSDART00000125630 7.017±1.46 0.240±0.03 0.557±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007156 IEA homophilic cell adhesion
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0060041 IMP retina development in camera-type eye
GO:0060219 IMP camera-type eye photoreceptor cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071370 Pcdh17-201 protein_coding Mus_musculus 3.00018e-42 180
ENST00000377918 PCDH17-001 protein_coding Homo_sapiens 2e-38 167

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