C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377918 PCDH17-001 ENSG00000118946 9606 + 13:57631812-57729311 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377918
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377918 0.735±0.00 1.050±0.00 0.483±0.00 3.566±1.81 0.330±0.25 0.888±0.82 0.333±0.28 0.106±0.00 0.212±0.03 14.342±13.50 0.037±0.03 0.469±0.18 0.885±0.37 3.239±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MF CIL_0000MF_0001 CGP 13:57631810-60163987

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071370 Pcdh17-201 protein_coding Mus_musculus 0 5830
ENSDART00000125630 pcdh17-201 protein_coding Danio_rerio 2e-38 167

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