C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071370 Pcdh17-201 ENSMUSG00000035566 10090 + 14:84443563-84537060 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071370
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071370 1.410±0.27 2.855±0.35 0.285±0.05 4.274±1.68 1.094±0.35 0.881±0.21 0.609±0.09 2.953±0.97 0.167±0.08 7.849±0.91 0.118±0.04 2.239±0.73 0.240±0.15 1.130±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MF CIL_0000MF_0002 CGP 14:84443563-87141224

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000125630 pcdh17-201 protein_coding Danio_rerio 3.00018e-42 180
ENST00000377918 PCDH17-001 protein_coding Homo_sapiens 0 5830
ENST00000484979 PCDH17-002 nonsense_mediated_decay Homo_sapiens 0 5334
ENST00000612954 PCDH17-004 protein_coding Homo_sapiens 0 2388
ENST00000615375 PCDH17-005 protein_coding Homo_sapiens 0 556

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