C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Meis homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000129114 ENSDARG00000091279 7955 + 17:53347159-53400632 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000129114
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000129114 46.876±26.91 3.705±1.29 2.783±0.00 0.507±0.00 10.450±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MM CIL_0007MM_0003 UCNEbase 17:53204768-53744017

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000002495 Meis3-001 protein_coding Mus_musculus 0 204
ENSMUST00000028639 Meis2-011 protein_coding Mus_musculus 0 429
ENSMUST00000074285 Meis2-014 protein_coding Mus_musculus 0 359
ENSMUST00000102538 Meis2-012 protein_coding Mus_musculus 0 292
ENSMUST00000110906 Meis2-006 protein_coding Mus_musculus 0 496
ENSMUST00000110907 Meis2-001 protein_coding Mus_musculus 0 496
ENSMUST00000110908 Meis2-013 protein_coding Mus_musculus 0 359
ENSMUST00000118654 Meis2-002 retained_intron Mus_musculus 9.99995e-41 172
ENSMUST00000120995 Meis2-003 processed_transcript Mus_musculus 4.99997e-41 172
ENSMUST00000149217 Meis2-016 processed_transcript Mus_musculus 0 243
ENSMUST00000150477 Meis2-017 processed_transcript Mus_musculus 0 270
ENSMUST00000151279 Meis2-010 processed_transcript Mus_musculus 0 496
ENSMUST00000175946 Meis3-004 retained_intron Mus_musculus 0 204
ENSMUST00000176446 Meis3-009 nonsense_mediated_decay Mus_musculus 0 204
ENSMUST00000176506 Meis3-002 protein_coding Mus_musculus 0 204
ENSMUST00000177156 Meis3-005 nonsense_mediated_decay Mus_musculus 1e-33 148
ENSMUST00000177493 Meis2-018 processed_transcript Mus_musculus 2e-21 106
ENSMUST00000189640 Meis2-020 retained_intron Mus_musculus 0 243
ENST00000424352 MEIS2-003 protein_coding Homo_sapiens 0 496
ENST00000557992 MEIS2-026 retained_intron Homo_sapiens 0 220
ENST00000558643 MEIS2-022 retained_intron Homo_sapiens 0 309
ENST00000559085 MEIS2-008 protein_coding Homo_sapiens 0 496
ENST00000559972 MEIS2-020 retained_intron Homo_sapiens 4e-34 148
ENST00000560570 MEIS2-009 nonsense_mediated_decay Homo_sapiens 0 496
ENST00000561208 MEIS2-001 protein_coding Homo_sapiens 0 424
ENST00000561264 MEIS2-024 retained_intron Homo_sapiens 0 220

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